2010年3月6日土曜日

PANTHER Classification system

遺伝子、タンパク、パスウェイ等の公開データベース。


The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a unique resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. Proteins are classified by expert biologists into families and subfamilies of shared function, which are then categorized by molecular function and biological processontology terms. For an increasing number of proteins, detailed biochemical interactions in canonical pathways are captured and can be viewed interactively.To get started, try either a text searchbrowsing by function, or take a look at interactive pie charts that summarize the functions of whole genomes for HumanMouseRat and Drosophila melanogaster.
PANTHER is supported by a research grant from the National Institute of General Medical Sciences [grant GM081084] and maintained by theEvolutionary Systems Biology Group at SRI.
 
Our database of genes, transcripts and proteins in the following species: HumanMouseRat, and Drosophila melanogaster.
 
 
A library (PANTHER/LIB) of protein families and subfamilies and associated data such as phylogenetic trees, multiple sequence alignments and HMMs.
 
 
A database of 165 expert-curated signaling and metabolic pathways mapped to protein sequences in PANTHER Library, viewable in standard CellDesigner notation, a simplified activity flow notation, and Systems Biology Graphical Notation (SBGN) using our interactive pathway applet.
 
 
A collection of terms (PANTHER/X) describing protein molecular functions and biological processes.


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